4EXG Design and synthesis of potent hydroxyethylamine (hea) bace-1 inhibitors date 2012-04-30
authors Borkakoti, N., Lindberg, J., Derbyshire, D.
compound source
symmetry
R_factor
R_Free 0.2274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 916 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of potent hydroxyethylamine (HEA) BACE-1 inhibitors carrying prime side 4,5,6,7-tetrahydrobenzazole and 4,5,6,7-tetrahydropyridinoazole templates., Sund C, Belda O, Borkakoti N, Lindberg J, Derbyshire D, Vrang L, Hamelink E, Hgren C, Woestenenk E, Wikstrom K, Eneroth A, Lindstrom E, Kalayanov G, Bioorg Med Chem Lett. 2012 Nov 1;22(21):6721-7. doi: 10.1016/j.bmcl.2012.08.097. , Epub 2012 Sep 5. PMID:23010268
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4exg.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 4EXG
  • CSU: Contacts of Structural Units for 4EXG
  • Structure Factors (485 Kb)
  • Retrieve 4EXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EXG from S2C, [Save to disk]
  • Re-refined 4exg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EXG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EXG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4exg_A] [4exg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EXG
  • Community annotation for 4EXG at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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