4EXM The crystal structure of an engineered phage lysin containing the binding domain of pesticin and the killing domain of T4-lysozyme date
authors Seddiki, N., Noinaj, N., Fairman, J.W., Lukacik, P., Barnard, T.J., Buchanan, S.K.
compound source
symmetry
R_factor
R_Free 0.2513
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
Gene YP
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural engineering of a phage lysin that targets Gram-negative pathogens., Lukacik P, Barnard TJ, Keller PW, Chaturvedi KS, Seddiki N, Fairman JW, Noinaj N, Kirby TL, Henderson JP, Steven AC, Hinnebusch BJ, Buchanan SK, Proc Natl Acad Sci U S A. 2012 Jun 7. PMID:22679291
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (421 Kb) [Save to disk]
  • Biological Unit Coordinates (4exm.pdb1.gz) 207 Kb
  • Biological Unit Coordinates (4exm.pdb2.gz) 209 Kb
  • CSU: Contacts of Structural Units for 4EXM
  • Structure Factors (328 Kb)
  • Retrieve 4EXM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EXM from S2C, [Save to disk]
  • Re-refined 4exm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EXM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EXM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EXM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4exm_D] [4exm_A] [4exm_C] [4exm] [4exm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EXM
  • Community annotation for 4EXM at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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