4F0Z Hydrolase Protein Binding date May 05, 2012
title Crystal Structure Of Calcineurin In Complex With The Calcine Inhibiting Domain Of The African Swine Fever Virus Protein
authors S.Grigoriu, W.Peti, R.Page
compound source
Molecule: Serinethreonine-Protein Phosphatase 2b Catalytic Alpha Isoform;
Chain: A
Fragment: Calcineurin A Subunit
Synonym: Cam-Prp Catalytic Subunit, Calmodulin-Dependent Ca A Subunit Alpha Isoform;
Ec: 3.1.3.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppp3ca, Calna, Cna
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11

Molecule: Calcineurin Subunit B Type 1
Chain: B
Fragment: Calcineurin B Subunit
Synonym: Protein Phosphatase 2b Regulatory Subunit 1, Prote Phosphatase 3 Regulatory Subunit B Alpha Isoform 1;
Ec: 3.1.3.16
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppp3r1, Cna2, Cnb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11

Molecule: Ankyrin Repeat Domain-Containing Protein A238l
Chain: C
Fragment: A238l Cid (Unp Residues 200-239)
Synonym: P28
Engineered: Yes

Organism_scientific: African Swine Fever Virus Malawi Lil 2
Organism_common: Asfv
Organism_taxid: 10500
Strain: Malawi (Lil 20-1)
Gene: 5el, Mal-047, Ordered Locus Name: Mal-047 Orf Name: 5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Rp1b
symmetry Space Group: P 1 21 1
R_factor 0.157 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.691 48.976 82.442 90.00 104.37 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CA, GOL enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • calcium-dependent protein se...
  • positive regulation of prote...

  • Primary referenceThe molecular mechanism of substrate engagement and immunosuppressant inhibition of calcineurin., Grigoriu S, Bond R, Cossio P, Chen JA, Ly N, Hummer G, Page R, Cyert MS, Peti W, PLoS Biol. 2013 Feb;11(2):e1001492. doi: 10.1371/journal.pbio.1001492. Epub 2013 , Feb 26. PMID:23468591
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (4f0z.pdb1.gz) 280 Kb
  • LPC: Ligand-Protein Contacts for 4F0Z
  • CSU: Contacts of Structural Units for 4F0Z
  • Structure Factors (325 Kb)
  • Retrieve 4F0Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F0Z from S2C, [Save to disk]
  • Re-refined 4f0z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F0Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F0Z
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4F0Z, from MSDmotif at EBI
  • Fold representative 4f0z from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f0z_B] [4f0z_A] [4f0z_C] [4f0z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4F0Z: [EFh] [PP2Ac ] by SMART
  • Other resources with information on 4F0Z
  • Community annotation for 4F0Z at PDBWiki (http://pdbwiki.org)

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