4F14 Structure of the SH3 domain of human nebulette in complex with a peptide of XIRP2 date
authors Sauer, F., Vahokoski, J., Wilmanns, M.
compound source
symmetry
R_factor
R_Free 0.1705
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.20
ligand ZN enzyme
Primary referenceIdentification of Xin-repeat proteins as novel ligands of the SH3 domains of nebulin and nebulette and analysis of their interaction during myofibril formation and remodeling., Eulitz S, Sauer F, Pelissier MC, Boisguerin P, Molt S, Schuld J, Orfanos Z, Kley RA, Volkmer R, Wilmanns M, Kirfel G, van der Ven PF, Furst DO, Mol Biol Cell. 2013 Oct;24(20):3215-26. doi: 10.1091/mbc.E13-04-0202. Epub 2013, Aug 28. PMID:23985323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (4f14.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 4F14
  • CSU: Contacts of Structural Units for 4F14
  • Structure Factors (123 Kb)
  • Retrieve 4F14 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F14 from S2C, [Save to disk]
  • Re-refined 4f14 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F14 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F14
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F14, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f14_B] [4f14_A] [4f14]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F14: [SH3 ] by SMART
    • Other resources with information on 4F14
  • Community annotation for 4F14 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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