4F1Z Crystal structures reveal the multi-ligand binding mechanism of the Staphylococcus aureus ClfB date 2012-05-07
authors Yang, M.J., Xiang, H., Wang, J.W., Liu, B., Chen, Y.G., Liu, L., Deng, X.M., Feng, Y.
compound source
symmetry
R_factor
R_Free 0.2511
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures Reveal the Multi-Ligand Binding Mechanism of Staphylococcus aureus ClfB., Xiang H, Feng Y, Wang J, Liu B, Chen Y, Liu L, Deng X, Yang M, PLoS Pathog. 2012 Jun;8(6):e1002751. Epub 2012 Jun 14. PMID:22719251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4f1z.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 4F1Z
  • CSU: Contacts of Structural Units for 4F1Z
  • Structure Factors (271 Kb)
  • Retrieve 4F1Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F1Z from S2C, [Save to disk]
  • Re-refined 4f1z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F1Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F1Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F1Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f1z_Q] [4f1z_A] [4f1z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4F1Z
  • Community annotation for 4F1Z at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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