4F2E Crystal structure of the Streptococcus pneumoniae D39 copper chaperone CupA with Cu(I) date 2012-05-07
authors Fu, Y., III, C.E.Dann., Giedroc, D.P.
compound source
symmetry
R_factor
R_Free 0.1998
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
ligand CL, CU1 enzyme
Gene SPD
Primary referenceA new structural paradigm in copper resistance in Streptococcus pneumoniae., Fu Y, Tsui HC, Bruce KE, Sham LT, Higgins KA, Lisher JP, Kazmierczak KM, Maroney MJ, Dann CE 3rd, Winkler ME, Giedroc DP, Nat Chem Biol. 2013 Jan 27. doi: 10.1038/nchembio.1168. PMID:23354287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (4f2e.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 4F2E
  • CSU: Contacts of Structural Units for 4F2E
  • Structure Factors (143 Kb)
  • Retrieve 4F2E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F2E from S2C, [Save to disk]
  • Re-refined 4f2e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F2E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F2E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F2E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f2e_A] [4f2e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4F2E
  • Community annotation for 4F2E at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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