4F9W Human P38alpha MAPK in Complex with a Novel and Selective Small Molecule Inhibitor date
authors Grum-Tokars, V.L., Minasov, G., Anderson, W.F., Watterson, D.M.
compound source
symmetry
R_factor
R_Free 0.21598
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand ACT, BME, GG5, GOL, LM4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of Novel Chemical Probes to Address CNS Protein Kinase Involvement in Synaptic Dysfunction., Watterson DM, Grum-Tokars VL, Roy SM, Schavocky JP, Bradaric BD, Bachstetter AD, Xing B, Dimayuga E, Saeed F, Zhang H, Staniszewski A, Pelletier JC, Minasov G, Anderson WF, Arancio O, Van Eldik LJ, PLoS One. 2013 Jun 26;8(6):e66226. Print 2013. PMID:23840427
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (4f9w.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4F9W
  • CSU: Contacts of Structural Units for 4F9W
  • Structure Factors (365 Kb)
  • Retrieve 4F9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F9W from S2C, [Save to disk]
  • Re-refined 4f9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F9W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F9W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f9w_A] [4f9w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4F9W: [S_TKc ] by SMART
    • Other resources with information on 4F9W
  • Community annotation for 4F9W at PDBWiki (http://pdbwiki.org)

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