4FA5 Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 20 Days date 2012-05-21
authors Yukl, E.T., Wilmot, C.M.
compound source
symmetry
R_factor
R_Free 0.20369
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.94
ligand 0AF, CA, EDO, HEC, MES, NA enzyme
Gene PDEN ; PDEN
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • C, E


    F, D


    Primary referenceDiradical intermediate within the context of tryptophan tryptophylquinone biosynthesis., Yukl ET, Liu F, Krzystek J, Shin S, Jensen LM, Davidson VL, Wilmot CM, Liu A, Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):4569-73. doi:, 10.1073/pnas.1215011110. Epub 2013 Mar 4. PMID:23487750
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (586 Kb) [Save to disk]
  • Biological Unit Coordinates (4fa5.pdb1.gz) 576 Kb
  • LPC: Ligand-Protein Contacts for 4FA5
  • CSU: Contacts of Structural Units for 4FA5
  • Structure Factors (1798 Kb)
  • Retrieve 4FA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FA5 from S2C, [Save to disk]
  • Re-refined 4fa5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FA5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FA5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fa5] [4fa5_D] [4fa5_E] [4fa5_C] [4fa5_A] [4fa5_B] [4fa5_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FA5
  • Community annotation for 4FA5 at PDBWiki (http://pdbwiki.org)

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