4FFZ Crystal Structure of DENV1-E111 fab fragment bound to DENV-1 DIII (Western Pacific-74 strain). date
authors Austin, S.K., Nelson, C.A., Fremont, D.H., CSGID, Center.for.Structural.Genomics.of.Infectious.Diseases.
compound source
symmetry
R_factor
R_Free 0.2776
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
Primary referenceStructural Basis of Differential Neutralization of DENV-1 Genotypes by an Antibody that Recognizes a Cryptic Epitope., Austin SK, Dowd KA, Shrestha B, Nelson CA, Edeling MA, Johnson S, Pierson TC, Diamond MS, Fremont DH, PLoS Pathog. 2012 Oct;8(10):e1002930. doi: 10.1371/journal.ppat.1002930. Epub, 2012 Oct 4. PMID:23055922
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (4ffz.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (4ffz.pdb2.gz) 85 Kb
  • CSU: Contacts of Structural Units for 4FFZ
  • Structure Factors (147 Kb)
  • Retrieve 4FFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FFZ from S2C, [Save to disk]
  • Re-refined 4ffz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FFZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FFZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ffz_H] [4ffz_X] [4ffz_Z] [4ffz_Y] [4ffz_L] [4ffz] [4ffz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4FFZ: [IG_like] [IGv ] by SMART
    • Other resources with information on 4FFZ
  • Community annotation for 4FFZ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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