4FM2 Pyrococcus abyssi B family DNA polymerase (triple mutant) bound to a dsDNA, in edition mode date
authors Gouge, J., Delarue, M.
compound source
symmetry
R_factor
R_Free 0.2215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...


  • Primary referenceMolecular Recognition of Canonical and Deaminated Bases by P. abyssi Family B DNA Polymerase., Gouge J, Ralec C, Henneke G, Delarue M, J Mol Biol. 2012 Oct 26;423(3):315-36. doi: 10.1016/j.jmb.2012.07.025. Epub 2012 , Aug 16. PMID:22902479
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (4fm2.pdb1.gz) 267 Kb
  • LPC: Ligand-Protein Contacts for 4FM2
  • CSU: Contacts of Structural Units for 4FM2
  • Structure Factors (825 Kb)
  • Retrieve 4FM2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FM2 from S2C, [Save to disk]
  • Re-refined 4fm2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FM2 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FM2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FM2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fm2_A] [4fm2_T] [4fm2_P] [4fm2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FM2: [POLBc ] by SMART
  • Other resources with information on 4FM2
  • Community annotation for 4FM2 at PDBWiki (http://pdbwiki.org)
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