4FPD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CL, LI1, RET	enzyme
Gene Ontology	Chain Function Process Component A ion channel activity
Primary reference	Deprotonation of d96 in bacteriorhodopsin opens the proton uptake pathway., Wang T, Sessions AO, Lunde CS, Rouhani S, Glaeser RM, Duan Y, Facciotti MT, Structure. 2013 Feb 5;21(2):290-7. doi: 10.1016/j.str.2012.12.018. PMID:23394942

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (4fpd.pdb1.gz) 113 Kb Biological Unit Coordinates (4fpd.pdb2.gz) 113 Kb LPC: Ligand-Protein Contacts for 4FPD CSU: Contacts of Structural Units for 4FPD Structure Factors (81 Kb) Retrieve 4FPD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4FPD from S2C, [Save to disk] Re-refined 4fpd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4FPD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4fpd] [4fpd_A] SWISS-PROT database: Domain found in 4FPD: [Bac_rhodopsin ] by SMART

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