4FR8 Oxidoreductase Oxidoreductase Inhibitor date Jun 26, 2012
title Crystal Structure Of Human Aldehyde Dehydrogenase-2 In Compl Nitroglycerin
authors B.S.Lang, K.Gruber
compound source
Molecule: Aldehyde Dehydrogenase, Mitochondrial
Chain: A, B, C, D, E, F, G, H
Synonym: Aldh Class 2, Aldh-E2, Aldhi
Ec: 1.2.1.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh2, Aldm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.132 R_Free 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.663 175.916 102.296 90.00 95.01 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ADP, BTB, MG, NA, NAD, TNG, URE enzyme Oxidoreductase E.C.1.2.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G
  • electron transfer activity


  • Primary referenceVascular Bioactivation of Nitroglycerin by Aldehyde Dehydrogenase-2: REACTION INTERMEDIATES REVEALED BY CRYSTALLOGRAPHY AND MASS SPECTROMETRY., Lang BS, Gorren AC, Oberdorfer G, Wenzl MV, Furdui CM, Poole LB, Mayer B, Gruber K, J Biol Chem. 2012 Nov 2;287(45):38124-34. doi: 10.1074/jbc.M112.371716. Epub 2012, Sep 17. PMID:22988236
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (685 Kb) [Save to disk]
  • Biological Unit Coordinates (4fr8.pdb1.gz) 344 Kb
  • Biological Unit Coordinates (4fr8.pdb2.gz) 341 Kb
  • LPC: Ligand-Protein Contacts for 4FR8
  • CSU: Contacts of Structural Units for 4FR8
  • Structure Factors (1800 Kb)
  • Retrieve 4FR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FR8 from S2C, [Save to disk]
  • Re-refined 4fr8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FR8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4FR8, from MSDmotif at EBI
  • Fold representative 4fr8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fr8_C] [4fr8] [4fr8_A] [4fr8_B] [4fr8_F] [4fr8_H] [4fr8_E] [4fr8_D] [4fr8_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FR8
  • Community annotation for 4FR8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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