4FRK Crystal structure of BACE1 in complex with aminooxazoline xanthene 11a date 2012-06-26
authors Whittington, D.A., Long, A.M.
compound source
symmetry
R_factor
R_Free 0.2229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand DWD, GOL, IOD BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and Property Based Design of Aminooxazoline Xanthenes as Selective and Orally Efficacious, CNS Penetrable BACE Inhibitors for the Treatment of Alzheimer's Disease., Huang H, La DS, Cheng AC, Whittington DA, Patel VF, Chen K, Dineen TA, Epstein O, Graceffa R, Hickman D, Kiang YH, Louie S, Luo Y, Wahl R, Wen P, Wood S, Fremeau B, J Med Chem. 2012 Aug 28. PMID:22928914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4frk.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4FRK
  • CSU: Contacts of Structural Units for 4FRK
  • Structure Factors (725 Kb)
  • Retrieve 4FRK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FRK from S2C, [Save to disk]
  • Re-refined 4frk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FRK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FRK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FRK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4frk_A] [4frk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FRK
  • Community annotation for 4FRK at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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