4FXP Crystal structure of adenosine 5'-phosphosulfate kinase from Arabidopsis thaliana in Complex with Sulfate and APS date 2012-07-03
authors Ravilious, G.E., Jez, J.M.
compound source
symmetry
R_factor
R_Free 0.1891
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand ADX, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceNucleotide binding site communication in Arabidopsis thaliana adenosine 5'-phosphosulfate kinase., Ravilious GE, Jez JM, J Biol Chem. 2012 Aug 31;287(36):30385-94. doi: 10.1074/jbc.M112.387001. Epub, 2012 Jul 18. PMID:22810229
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (4fxp.pdb1.gz) 134 Kb
  • Biological Unit Coordinates (4fxp.pdb2.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 4FXP
  • CSU: Contacts of Structural Units for 4FXP
  • Structure Factors (383 Kb)
  • Retrieve 4FXP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FXP from S2C, [Save to disk]
  • Re-refined 4fxp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FXP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FXP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FXP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fxp_A] [4fxp] [4fxp_C] [4fxp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FXP
  • Community annotation for 4FXP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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