4G3G Crystal structure of murine NF-kappaB inducing kinase (NIK) V408L bound to a 2-(aminothiazolyl)phenol (cmp3) date 2012-07-13
authors Hymowitz, S.
compound source
symmetry
R_factor
R_Free 0.25150
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand 0WA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of the catalytic domain of the NF-kappaB inducing kinase reveals a narrow but flexible active site., de Leon-Boenig G, Bowman KK, Feng JA, Crawford T, Everett C, Franke Y, Oh A, Stanley M, Staben ST, Starovasnik MA, Wallweber HJ, Wu J, Wu LC, Johnson AR, Hymowitz SG, Structure. 2012 Oct 10;20(10):1704-14. doi: 10.1016/j.str.2012.07.013. Epub 2012 , Aug 23. PMID:22921830
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (4g3g.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 4G3G
  • CSU: Contacts of Structural Units for 4G3G
  • Structure Factors (171 Kb)
  • Retrieve 4G3G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G3G from S2C, [Save to disk]
  • Re-refined 4g3g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G3G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G3G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G3G, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g3g] [4g3g_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G3G: [STYKc ] by SMART
    • Other resources with information on 4G3G
  • Community annotation for 4G3G at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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