4G4Q MutM containing F114A mutation bound to undamaged DNA date 2012-07-16
authors Sung, R.J., Zhang, M., Qi, Y., Verdine, G.L.
compound source
symmetry
R_factor
R_Free 0.1977
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.86
ligand TX2, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and biochemical analysis of DNA helix-invasion by the bacterial 8-oxoguanine DNA glycosylase MutM., Sung RJ, Zhang M, Qi Y, Verdine GL, J Biol Chem. 2013 Feb 12. PMID:23404556
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4g4q.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 4G4Q
  • CSU: Contacts of Structural Units for 4G4Q
  • Structure Factors (355 Kb)
  • Retrieve 4G4Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G4Q from S2C, [Save to disk]
  • Re-refined 4g4q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G4Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G4Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G4Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g4q] [4g4q_A] [4g4q_B] [4g4q_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4G4Q: [Fapy_DNA_glyco] [H2TH ] by SMART
  • Other resources with information on 4G4Q
  • Community annotation for 4G4Q at PDBWiki (http://pdbwiki.org)

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