4G55 Clathrin terminal domain complexed with pitstop 2 date 2012-07-17
authors Bulut, H., Kleist, L.Von., Saenger, W., Haucke, V.
compound source
symmetry
R_factor
R_Free 0.21458
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.69
ligand ACT, DMS, EDO, PEG, VH2 enzyme
note 4G55 supersedes 2XZH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRole of the clathrin terminal domain in regulating coated pit dynamics revealed by small molecule inhibition., von Kleist L, Stahlschmidt W, Bulut H, Gromova K, Puchkov D, Robertson MJ, Macgregor KA, Tomlin N, Pechstein A, Chau N, Chircop M, Sakoff J, von Kries JP, Saenger W, Krausslich HG, Shupliakov O, Robinson PJ, McCluskey A, Haucke V, Cell. 2011 Aug 5;146(3):471-84. PMID:21816279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (4g55.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 4G55
  • CSU: Contacts of Structural Units for 4G55
  • Structure Factors (362 Kb)
  • Retrieve 4G55 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G55 from S2C, [Save to disk]
  • Re-refined 4g55 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G55 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G55
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G55, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g55] [4g55_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4G55
  • Community annotation for 4G55 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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