4G92 CCAAT-binding complex from Aspergillus nidulans with DNA date 2012-07-23
authors Huber, E.M., Scharf, D.H., Hortschansky, P., Groll, M., Brakhage, A.A.
compound source
symmetry
R_factor
R_Free 0.19008
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand SO4 enzyme
Gene ANIA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceDNA Minor Groove Sensing and Widening by the CCAAT-Binding Complex., Huber EM, Scharf DH, Hortschansky P, Groll M, Brakhage AA, Structure. 2012 Oct 10;20(10):1757-68. doi: 10.1016/j.str.2012.07.012. Epub 2012 , Aug 16. PMID:22902862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (4g92.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 4G92
  • CSU: Contacts of Structural Units for 4G92
  • Structure Factors (745 Kb)
  • Retrieve 4G92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G92 from S2C, [Save to disk]
  • Re-refined 4g92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G92
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G92, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g92_D] [4g92_C] [4g92_A] [4g92] [4g92_B] [4g92_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G92: [CBF ] by SMART
    • Other resources with information on 4G92
  • Community annotation for 4G92 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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