4G9E Crystal structures of N-acyl homoserine lactonase AidH complexed with N-butanoyl homoserine date 2012-07-23
authors Liang, D.C., Yan, X.X., Gao, A.
compound source
symmetry
R_factor
R_Free 0.1517
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.09
ligand C4L enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHigh-resolution structures of AidH complexes provide insights into a novel catalytic mechanism for N-acyl homoserine lactonase., Gao A, Mei GY, Liu S, Wang P, Tang Q, Liu YP, Wen H, An XM, Zhang LQ, Yan XX, Liang DC, Acta Crystallogr D Biol Crystallogr. 2013 Jan;69(Pt 1):82-91. doi:, 10.1107/S0907444912042369. Epub 2012 Dec 20. PMID:23275166
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (4g9e.pdb1.gz) 106 Kb
  • Biological Unit Coordinates (4g9e.pdb2.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 4G9E
  • CSU: Contacts of Structural Units for 4G9E
  • Structure Factors (1281 Kb)
  • Retrieve 4G9E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G9E from S2C, [Save to disk]
  • Re-refined 4g9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G9E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G9E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G9E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g9e_B] [4g9e] [4g9e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4G9E
  • Community annotation for 4G9E at PDBWiki (http://pdbwiki.org)
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