4GBM Transferase date Jul 27, 2012
title Sulfotransferase Domain From The Curacin Biosynthetic Pathwa
authors J.G.Mccarthy, J.L.Smith
compound source
Molecule: Curm Sulfotransferase
Chain: A
Fragment: Sulfotransferase Domain (Unp Residues 1598-1917)
Engineered: Yes
Mutation: Yes
Organism_scientific: Moorea Producta
Organism_taxid: 1155739
Gene: Curm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
Other_details: The Original Name Of The Organism Was Lyngby Majuscula Which Was Initially Named Moorea Producta But Has Changed To Moorea Producens
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.856 67.299 118.016 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.62 Å
ligand A3P, CL, P6G, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of Functional Group Activation by Sulfotransferases in Complex Metabolic Pathways., McCarthy JG, Eisman EB, Kulkarni S, Gerwick L, Gerwick WH, Wipf P, Sherman DH, Smith JL, ACS Chem Biol. 2012 Sep 26. PMID:22991895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4gbm.pdb1.gz) 112 Kb
  • LPC: Ligand-Protein Contacts for 4GBM
  • CSU: Contacts of Structural Units for 4GBM
  • Structure Factors (584 Kb)
  • Retrieve 4GBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GBM from S2C, [Save to disk]
  • Re-refined 4gbm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GBM in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GBM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4GBM, from MSDmotif at EBI
  • Fold representative 4gbm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gbm] [4gbm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GBM
  • Community annotation for 4GBM at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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