4GC6 Crystal structure of Dpo4 in complex with N-MC-dAMP opposite dT date
authors Eoff, R.L., Ketkar, A., Banerjee, S., Zafar, M.K.
compound source
symmetry
R_factor
R_Free 0.2758
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand 0OH, CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDifferential furanose selection in the active sites of archaeal DNA polymerases probed by fixed-conformation nucleotide analogues., Ketkar A, Zafar MK, Marquez VE, Banerjee S, Egli M, Eoff RL, Biochemistry. 2012 Oct 11. PMID:23050956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (4gc6.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4GC6
  • CSU: Contacts of Structural Units for 4GC6
  • Structure Factors (141 Kb)
  • Retrieve 4GC6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GC6 from S2C, [Save to disk]
  • Re-refined 4gc6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GC6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GC6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GC6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gc6_A] [4gc6_P] [4gc6] [4gc6_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GC6
  • Community annotation for 4GC6 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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