OCA Atlas for 4GF9

4GF9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, LP5, STE

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B, D, C

Primary reference

Structural insights into the dual strategy of recognition by peptidoglycan recognition protein, PGRP-S: structure of the ternary complex of PGRP-S with lipopolysaccharide and stearic acid., Sharma P, Dube D, Sinha M, Yadav S, Kaur P, Sharma S, Singh TP, PLoS One. 2013;8(1):e53756. doi: 10.1371/journal.pone.0053756. Epub 2013 Jan 9. PMID:23326499

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]

Biological Unit Coordinates (4gf9.pdb1.gz) 229 Kb

LPC: Ligand-Protein Contacts for 4GF9

CSU: Contacts of Structural Units for 4GF9

Structure Factors (413 Kb)

Retrieve 4GF9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4GF9 from S2C, [Save to disk]

Re-refined 4gf9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GF9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gf9] [4gf9_A] [4gf9_B] [4gf9_C] [4gf9_D]

SWISS-PROT database:

Domains found in 4GF9: [Ami_2] [PGRP ] by SMART

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