4GIV Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ183 date
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
ligand 4GI, FMT enzyme
Gene BURPS1710B
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peptidyl-prolyl cis-trans is...


    • Primary referenceA structural biology approach enables the development of antimicrobials targeting bacterial immunophilins., Begley DW, Fox D 3rd, Jenner D, Juli C, Pierce PG, Abendroth J, Muruthi M, Safford K, Anderson V, Atkins K, Barnes SR, Moen SO, Raymond AC, Stacy R, Myler PJ, Staker BL, Harmer NJ, Norville IH, Holzgrabe U, Sarkar-Tyson M, Edwards TE, Lorimer DD, Antimicrob Agents Chemother. 2014 Mar;58(3):1458-67. doi: 10.1128/AAC.01875-13., Epub 2013 Dec 23. PMID:24366729
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (4giv.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (4giv.pdb2.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 4GIV
  • CSU: Contacts of Structural Units for 4GIV
  • Structure Factors (222 Kb)
  • Retrieve 4GIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GIV from S2C, [Save to disk]
  • Re-refined 4giv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GIV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GIV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4giv_A] [4giv] [4giv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GIV: [UBQ ] by SMART
    • Other resources with information on 4GIV
  • Community annotation for 4GIV at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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