4GIZ Viral Protein date Aug 09, 2012
title Crystal Structure Of Full-Length Human Papillomavirus Oncopr In Complex With Lxxll Peptide Of Ubiquitin Ligase E6ap At 2 Resolution
authors A.G.Mcewen, K.Zanier, S.Charbonnier, P.Poussin, V.Cura, S.Vande P G.Trave, J.Cavarelli
compound source
Molecule: Maltose-Binding Periplasmic Protein, Ubiquitin Li Chimeric Protein;
Chain: A, B
Fragment: Unp Residues 27-392403-414
Synonym: Mbp, Mmbp, Maltodextrin-Binding Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli, Homo Sapiens
Organism_taxid: 83333, 9606
Strain: K12
Gene: Male, B4034, Jw3994
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein E6
Chain: C, D
Fragment: Unp Residues 9-150
Engineered: Yes
Mutation: Yes

Organism_scientific: Human Papillomavirus Type 16
Organism_taxid: 333760
Gene: E6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.166 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.279 134.936 138.794 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand GLC, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • carbohydrate transmembrane t...


  • D, C


    Primary referenceStructural basis for hijacking of cellular LxxLL motifs by papillomavirus E6 oncoproteins., Zanier K, Charbonnier S, Sidi AO, McEwen AG, Ferrario MG, Poussin-Courmontagne P, Cura V, Brimer N, Babah KO, Ansari T, Muller I, Stote RH, Cavarelli J, Vande Pol S, Trave G, Science. 2013 Feb 8;339(6120):694-8. doi: 10.1126/science.1229934. PMID:23393263
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (361 Kb) [Save to disk]
  • Biological Unit Coordinates (4giz.pdb1.gz) 179 Kb
  • Biological Unit Coordinates (4giz.pdb2.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 4GIZ
  • CSU: Contacts of Structural Units for 4GIZ
  • Structure Factors (489 Kb)
  • Retrieve 4GIZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GIZ from S2C, [Save to disk]
  • Re-refined 4giz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GIZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GIZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4GIZ, from MSDmotif at EBI
  • Fold representative 4giz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4giz_B] [4giz] [4giz_A] [4giz_C] [4giz_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GIZ
  • Community annotation for 4GIZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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