4GJ7 Hydrolase Hydrolase Inhibitor date Aug 09, 2012
title Crystal Structure Of Renin In Complex With Nvp-Bca079 (Compo
authors N.Ostermann, F.Zink, M.Kroemer
compound source
Molecule: Renin
Chain: A, B
Fragment: Unp Residues 67-406
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
symmetry Space Group: P 21 3
R_factor 0.180 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.476 141.476 141.476 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 0LT, NAG, SO4 enzyme Hydrolase E.C.3.4.23.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Discovery of Novel Potent trans-3,4-Disubstituted Pyrrolidine Inhibitors of the Human Aspartic Protease Renin from in silico Three-Dimensional (3D) Pharmacophore Searches., Lorthiois E, Breitenstein W, Cumin F, Ehrhardt C, Francotte E, Jacoby E, Ostermann N, Sellner H, Kosaka T, Webb R, Rigel D, Hassiepen U, Richert P, Wagner T, Maibaum JK, J Med Chem. 2013 Feb 20. PMID:23425156
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (4gj7.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (4gj7.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 4GJ7
  • CSU: Contacts of Structural Units for 4GJ7
  • Structure Factors (459 Kb)
  • Retrieve 4GJ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GJ7 from S2C, [Save to disk]
  • Re-refined 4gj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GJ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GJ7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4GJ7, from MSDmotif at EBI
  • Fold representative 4gj7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gj7_B] [4gj7_A] [4gj7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GJ7
  • Community annotation for 4GJ7 at PDBWiki (http://pdbwiki.org)

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