4GJD Crystal structure of renin in complex with NVP-BGQ311 (compound 12) date 2012-08-09
authors Ostermann, N., Zink, F., Kroemer, M.
compound source
symmetry
R_factor
R_Free 0.2251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand 0N0, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Novel Class of Oral Direct Renin Inhibitors: Highly Potent 3,5-Disubstituted Piperidines bearing a Tricyclic P3-P1 Pharmacophore., Ostermann N, Ruedisser S, Ehrhardt C, Breitenstein W, Marzinzik AL, Jacoby E, Vangrevelinghe E, Ottl J, Klumpp M, Hartwieg C, Cumin F, Hassiepen U, Trappe J, Sedrani RC, Geisse S, Gerhartz B, Richert P, Francotte E, Wagner T, Kromer M, Kosaka T, Webb RL, Rigel DF, Maibaum JK, Baeschlin DK, J Med Chem. 2013 Jan 29. PMID:23360239
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4gjd.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (4gjd.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 4GJD
  • CSU: Contacts of Structural Units for 4GJD
  • Structure Factors (532 Kb)
  • Retrieve 4GJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GJD from S2C, [Save to disk]
  • Re-refined 4gjd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GJD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GJD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gjd] [4gjd_B] [4gjd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GJD
  • Community annotation for 4GJD at PDBWiki (http://pdbwiki.org)

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