OCA Atlas for 4GKK

4GKK

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, PAR, RSQ, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
V

Primary reference

Expanded use of sense codons is regulated by modified cytidines in tRNA., Cantara WA, Murphy FV 4th, Demirci H, Agris PF, Proc Natl Acad Sci U S A. 2013 Jun 18. PMID:23781103

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2144 Kb) [Save to disk]

Biological Unit Coordinates (4gkk.pdb1.gz) 2132 Kb

LPC: Ligand-Protein Contacts for 4GKK

CSU: Contacts of Structural Units for 4GKK

Structure Factors (4139 Kb)

Retrieve 4GKK in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4GKK from S2C, [Save to disk]

Re-refined 4gkk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GKK in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gkk] [4gkk_A] [4gkk_B] [4gkk_C] [4gkk_D] [4gkk_E] [4gkk_F] [4gkk_G] [4gkk_H] [4gkk_I] [4gkk_J] [4gkk_K] [4gkk_L] [4gkk_M] [4gkk_N] [4gkk_O] [4gkk_P] [4gkk_Q] [4gkk_R] [4gkk_S] [4gkk_T] [4gkk_V] [4gkk_W] [4gkk_X]

SWISS-PROT database:

Domains found in 4GKK: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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