4GMY JAK2 kinase (JH1 domain) in complex with 2,6-DICHLORO-N-{2-[(CYCLOPROPYLCARBONYL)AMINO]PYRIDIN-4-YL}BENZAMIDE date 2012-08-16
authors Murray, J.M., Shia, S.
compound source
symmetry
R_factor
R_Free 0.2331
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand 0X5, PTR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLead identification of novel and selective TYK2 inhibitors., Liang J, Tsui V, Van Abbema A, Bao L, Barrett K, Beresini M, Berezhkovskiy L, Blair WS, Chang C, Driscoll J, Eigenbrot C, Ghilardi N, Gibbons P, Halladay J, Johnson A, Kohli PB, Lai Y, Liimatta M, Mantik P, Menghrajani K, Murray J, Sambrone A, Xiao Y, Shia S, Shin Y, Smith J, Sohn S, Stanley M, Ultsch M, Zhang B, Wu LC, Magnuson S, Eur J Med Chem. 2013 May 14;67C:175-187. doi: 10.1016/j.ejmech.2013.03.070. PMID:23867602
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (4gmy.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 4GMY
  • CSU: Contacts of Structural Units for 4GMY
  • Structure Factors (109 Kb)
  • Retrieve 4GMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GMY from S2C, [Save to disk]
  • Re-refined 4gmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GMY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GMY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gmy] [4gmy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GMY: [TyrKc ] by SMART
    • Other resources with information on 4GMY
  • Community annotation for 4GMY at PDBWiki (http://pdbwiki.org)

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