4GND date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ZN enzyme
Primary referenceThe methyltransferase NSD3 has chromatin-binding motifs, PHD5-C5HCH, that are distinct from other NSD (nuclear receptor SET domain) family members in their histone H3 recognition., He C, Li F, Zhang J, Wu J, Shi Y, J Biol Chem. 2013 Feb 15;288(7):4692-703. doi: 10.1074/jbc.M112.426148. Epub 2012, Dec 26. PMID:23269674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (4gnd.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (4gnd.pdb2.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 4GND
  • CSU: Contacts of Structural Units for 4GND
  • Structure Factors (148 Kb)
  • Retrieve 4GND in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GND from S2C, [Save to disk]
  • Re-refined 4gnd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GND in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gnd] [4gnd_A] [4gnd_C]
  • SWISS-PROT database:
  • Domain found in 4GND: [PHD ] by SMART

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