4GPY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 6HS enzyme
Primary referenceCrystal Structures of a Bioactive 6'-Hydroxy Variant of Sisomicin Bound to the Bacterial and Protozoal Ribosomal Decoding Sites., Kondo J, Koganei M, Maianti JP, Ly VL, Hanessian S, ChemMedChem. 2013 Feb 21. doi: 10.1002/cmdc.201200579. PMID:23436717
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (4gpy.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 4GPY
  • CSU: Contacts of Structural Units for 4GPY
  • Structure Factors (26 Kb)
  • Retrieve 4GPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GPY from S2C, [Save to disk]
  • Re-refined 4gpy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gpy] [4gpy_A] [4gpy_B]
  • SWISS-PROT database:

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