4GQ9 Chikungunya virus neutralizing antibody 9.8B Fab fragment date
authors Sun, S., Rossmann, M.G.
compound source
symmetry
R_factor
R_Free 0.35930
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
Primary referenceStructural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization., Sun S, Xiang Y, Akahata W, Holdaway H, Pal P, Zhang X, Diamond MS, Nabel GJ, Rossmann MG, Elife. 2013;2:e00435. doi: 10.7554/eLife.00435. Epub 2013 Apr 2. PMID:23577234
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (4gq9.pdb1.gz) 139 Kb
  • CSU: Contacts of Structural Units for 4GQ9
  • Structure Factors (86 Kb)
  • Retrieve 4GQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GQ9 from S2C, [Save to disk]
  • Re-refined 4gq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GQ9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GQ9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gq9_H] [4gq9] [4gq9_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GQ9: [IG_like] [IGv ] by SMART
    • Other resources with information on 4GQ9
  • Community annotation for 4GQ9 at PDBWiki (http://pdbwiki.org)

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