4GS9 Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with an inactive benzoxadiazole antagonist date
authors Scheuermann, T.H., Gardner, K.H.
compound source
symmetry
R_factor
R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.72
ligand 0XB, PE8 enzyme
Primary referenceDevelopment of Inhibitors of the PAS-B Domain of the HIF-2alpha Transcription Factor., Rogers JL, Bayeh L, Scheuermann TH, Longgood J, Key J, Naidoo J, Melito L, Shokri C, Frantz DE, Bruick RK, Gardner KH, Macmillan JB, Tambar UK, J Med Chem. 2013 Feb 18. PMID:23363003
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (4gs9.pdb1.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 4GS9
  • CSU: Contacts of Structural Units for 4GS9
  • Structure Factors (278 Kb)
  • Retrieve 4GS9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GS9 from S2C, [Save to disk]
  • Re-refined 4gs9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GS9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GS9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GS9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gs9_A] [4gs9_B] [4gs9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GS9: [PAC] [PAS ] by SMART
  • Other resources with information on 4GS9
  • Community annotation for 4GS9 at PDBWiki (http://pdbwiki.org)

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