4GUS Crystal structure of LSD2-NPAC with H3 in space group P3221 date 2012-08-29
authors Chen, F., Dong, Z., Fang, J., Yang, Y., Li, Z., Xu, Y., Yang, H., Wang, P., Fang, R., Shi, Y., Xu, Y.
compound source
symmetry
R_factor
R_Free 0.2370
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.23
ligand FAD, GOL, IOD, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


C


Primary referenceLSD2/KDM1B and Its Cofactor NPAC/GLYR1 Endow a Structural and Molecular Model for Regulation of H3K4 Demethylation., Fang R, Chen F, Dong Z, Hu D, Barbera AJ, Clark EA, Fang J, Yang Y, Mei P, Rutenberg M, Li Z, Zhang Y, Xu Y, Yang H, Wang P, Simon MD, Zhou Q, Li J, Marynick MP, Li X, Lu H, Kaiser UB, Kingston RE, Xu Y, Shi YG, Mol Cell. 2012 Dec 19. pii: S1097-2765(12)00976-8. doi:, 10.1016/j.molcel.2012.11.019. PMID:23260659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (4gus.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4GUS
  • CSU: Contacts of Structural Units for 4GUS
  • Structure Factors (646 Kb)
  • Retrieve 4GUS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GUS from S2C, [Save to disk]
  • Re-refined 4gus structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GUS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GUS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GUS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gus_A] [4gus] [4gus_B] [4gus_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GUS: [AT_hook ] by SMART
    • Other resources with information on 4GUS
  • Community annotation for 4GUS at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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