4GXV Crystal structure of anti-influenza virus antibody 1F1 date
authors Ekiert, D.C., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.2072
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
ligand PCA enzyme
Primary referenceInfluenza Human Monoclonal Antibody 1F1 Interacts with Three Major Antigenic Sites and Residues Mediating Human Receptor Specificity in H1N1 Viruses., Tsibane T, Ekiert DC, Krause JC, Martinez O, Crowe JE Jr, Wilson IA, Basler CF, PLoS Pathog. 2012 Dec;8(12):e1003067. doi: 10.1371/journal.ppat.1003067. Epub, 2012 Dec 6. PMID:23236279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]
  • Biological Unit Coordinates (4gxv.pdb1.gz) 149 Kb
  • Biological Unit Coordinates (4gxv.pdb2.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 4GXV
  • CSU: Contacts of Structural Units for 4GXV
  • Structure Factors (2041 Kb)
  • Retrieve 4GXV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GXV from S2C, [Save to disk]
  • Re-refined 4gxv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GXV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GXV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GXV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gxv_M] [4gxv_I] [4gxv_L] [4gxv_H] [4gxv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GXV: [IG_like] [IGv ] by SMART
    • Other resources with information on 4GXV
  • Community annotation for 4GXV at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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