4GYW date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG, SO4, UDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A


Primary referenceStructural snapshots of the reaction coordinate for O-GlcNAc transferase., Lazarus MB, Jiang J, Gloster TM, Zandberg WF, Whitworth GE, Vocadlo DJ, Walker S, Nat Chem Biol. 2012 Dec;8(12):966-8. doi: 10.1038/nchembio.1109. Epub 2012 Oct, 28. PMID:23103939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (467 Kb) [Save to disk]
  • Biological Unit Coordinates (4gyw.pdb1.gz) 227 Kb
  • Biological Unit Coordinates (4gyw.pdb2.gz) 234 Kb
  • Biological Unit Coordinates (4gyw.pdb3.gz) 450 Kb
  • Biological Unit Coordinates (4gyw.pdb4.gz) 465 Kb
  • LPC: Ligand-Protein Contacts for 4GYW
  • CSU: Contacts of Structural Units for 4GYW
  • Structure Factors (1757 Kb)
  • Retrieve 4GYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GYW from S2C, [Save to disk]
  • Re-refined 4gyw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gyw] [4gyw_A] [4gyw_B] [4gyw_C] [4gyw_D]
  • SWISS-PROT database:
  • Domain found in 4GYW: [TPR ] by SMART

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