4H1E Hydrolase Hydrolase Inhibitor date Sep 10, 2012
title Structure Of Bace-1 Bound To (7ar)-6-Benzoyl-7a-(4-(3-Cyanop Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,4-D]Pyr 2(3h)-Iminium
authors P.Orth
compound source
Molecule: Beta-Secretase 1
Chain: A, B
Fragment: Unp Residues 41-454
Synonym: Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Amyloi Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21(De3)
Gene: Bace, Bace1, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.260 R_Free 0.297
length a length b length c angle alpha angle beta angle gamma
86.212 89.936 131.323 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 10J BindingDB enzyme Hydrolase E.C. BRENDA
Primary referenceDesign and Validation of Bicyclic Iminopyrimidinones As Beta Amyloid Cleaving Enzyme-1 (BACE1) Inhibitors: Conformational Constraint to Favor a Bioactive Conformation., Mandal M, Zhu Z, Cumming JN, Liu X, Strickland C, Mazzola RD, Caldwell JP, Leach P, Grzelak M, Hyde L, Zhang Q, Terracina G, Zhang L, Chen X, Kuvelkar R, Kennedy ME, Favreau L, Cox K, Orth P, Buevich A, Voigt J, Wang H, Kazakevich I, McKittrick BA, Greenlee W, Parker EM, Stamford AW, J Med Chem. 2012 Oct 1. PMID:22989333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (4h1e.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (4h1e.pdb2.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 4H1E
  • CSU: Contacts of Structural Units for 4H1E
  • Structure Factors (2461 Kb)
  • Retrieve 4H1E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H1E from S2C, [Save to disk]
  • Re-refined 4h1e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H1E in 3D
  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 4H1E
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4H1E, from MSDmotif at EBI
  • Fold representative 4h1e from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h1e_B] [4h1e] [4h1e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4H1E
  • Community annotation for 4H1E at PDBWiki (http://pdbwiki.org)
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