4H79 Crystal structure of CasB from Thermobifida fusca date 2012-09-20
authors Ke, A., Nam, K.H.
compound source
symmetry
R_factor
R_Free 0.1962
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand EDO enzyme
Gene TFU
Primary referenceNucleic acid binding surface and dimer interface revealed by CRISPR-associated CasB protein structures., Nam KH, Huang Q, Ke A, FEBS Lett. 2012 Nov 16;586(22):3956-61. doi: 10.1016/j.febslet.2012.09.041. Epub , 2012 Oct 16. PMID:23079036
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (4h79.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 4H79
  • CSU: Contacts of Structural Units for 4H79
  • Structure Factors (278 Kb)
  • Retrieve 4H79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H79 from S2C, [Save to disk]
  • Re-refined 4h79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H79
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H79, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h79_A] [4h79]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4H79
  • Community annotation for 4H79 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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