4H88 Structure of POM1 FAB fragment complexed with mouse PrPc Fragment 120-230 date 2012-09-21
authors Baral, P.K., Wieland, B., Swayampakula, M., James, M.N.
compound source
symmetry
R_factor
R_Free 0.2344
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe toxicity of antiprion antibodies is mediated by the flexible tail of the prion protein., Sonati T, Reimann RR, Falsig J, Baral PK, O'Connor T, Hornemann S, Yaganoglu S, Li B, Herrmann US, Wieland B, Swayampakula M, Rahman MH, Das D, Kav N, Riek R, Liberski PP, James MN, Aguzzi A, Nature. 2013 Jul 31. doi: 10.1038/nature12402. PMID:23903654
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (4h88.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 4H88
  • CSU: Contacts of Structural Units for 4H88
  • Structure Factors (741 Kb)
  • Retrieve 4H88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H88 from S2C, [Save to disk]
  • Re-refined 4h88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4H88 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4H88
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H88, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h88_A] [4h88] [4h88_L] [4h88_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4H88: [IG_like] [IGv] [PRP ] by SMART
    • Other resources with information on 4H88
  • Community annotation for 4H88 at PDBWiki (http://pdbwiki.org)

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