4HP3 Crystal structure of Tet3 in complex with a CpG dsDNA date
authors Chao, X., Tempel, W., Bian, C., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2434
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.05
ligand UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceTet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development., Xu Y, Xu C, Kato A, Tempel W, Abreu JG, Bian C, Hu Y, Hu D, Zhao B, Cerovina T, Diao J, Wu F, He HH, Cui Q, Clark E, Ma C, Barbara A, Veenstra GJ, Xu G, Kaiser UB, Liu XS, Sugrue SP, He X, Min J, Kato Y, Shi YG, Cell. 2012 Dec 7;151(6):1200-13. doi: 10.1016/j.cell.2012.11.014. PMID:23217707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (4hp3.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4HP3
  • CSU: Contacts of Structural Units for 4HP3
  • Structure Factors (465 Kb)
  • Retrieve 4HP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HP3 from S2C, [Save to disk]
  • Re-refined 4hp3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HP3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HP3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hp3] [4hp3_A] [4hp3_C] [4hp3_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HP3
  • Community annotation for 4HP3 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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