4HRY The structure of Arabidopsis thaliana KAI2 date 2012-10-29
authors Bythell-Douglas, R., Waters, M.T., Scaffidi, A., Flematti, G.R., Smith, S.M., Bond, C.S.
compound source
symmetry
R_factor
R_Free 0.1972
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand CL, GOL, NA, PO4, TAM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of the Karrikin-Insensitive Protein (KAI2) in Arabidopsis thaliana., Bythell-Douglas R, Waters MT, Scaffidi A, Flematti GR, Smith SM, Bond CS, PLoS One. 2013;8(1):e54758. doi: 10.1371/journal.pone.0054758. Epub 2013 Jan 18. PMID:23349965
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (4hry.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4HRY
  • CSU: Contacts of Structural Units for 4HRY
  • Structure Factors (948 Kb)
  • Retrieve 4HRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HRY from S2C, [Save to disk]
  • Re-refined 4hry structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HRY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HRY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hry] [4hry_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HRY
  • Community annotation for 4HRY at PDBWiki (http://pdbwiki.org)

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