4HV0 Structure and Function of AvtR, a Novel Transcriptional Regulator from a Hyperthermophilic Archaeal Lipothrixvirus date 2012-11-05
authors Peixeiro, N., Keller, J., Collinet, B., Leulliot, N., Campanacci, V., Cortez, D., Cambillau, C., Nitta, K.R., Vincentelli, R., Forterre, P., Prangishvili, D., Sezonov, G., Tilbeurgh, H.van.
compound source
symmetry
R_factor
R_Free 0.25832
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and function of AvtR, a novel transcriptional regulator from a hyperthermophilic archaeal lipothrixvirus., Peixeiro N, Keller J, Collinet B, Leulliot N, Campanacci V, Cortez D, Cambillau C, Nitta KR, Vincentelli R, Forterre P, Prangishvili D, Sezonov G, van Tilbeurgh H, J Virol. 2012 Oct 10. PMID:23055559
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (4hv0.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (4hv0.pdb2.gz) 18 Kb
  • Biological Unit Coordinates (4hv0.pdb3.gz) 17 Kb
  • Biological Unit Coordinates (4hv0.pdb4.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 4HV0
  • CSU: Contacts of Structural Units for 4HV0
  • Structure Factors (222 Kb)
  • Retrieve 4HV0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HV0 from S2C, [Save to disk]
  • Re-refined 4hv0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HV0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HV0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HV0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hv0_B] [4hv0_D] [4hv0] [4hv0_A] [4hv0_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HV0
  • Community annotation for 4HV0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science