4HYJ	Crystal structure of Exiguobacterium sibiricum rhodopsin	date	2012-11-13
authors	Gushchin, I., Chervakov, P., Kuzmichev, P., Popov, A., Round, E., Borshchevskiy, V., Dolgikh, D., Kirpichnikov, M., Petrovskaya, L., Chupin, V., Arseniev, A., Gordeliy, V.
compound		source
symmetry		R_factor R_Free 0.2149
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.30
ligand	LFA, RET	enzyme
Gene	EXIG
Gene Ontology	Chain Function Process Component A, B ion channel activity light-activated ion channel ...
Primary reference	Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria., Gushchin I, Chervakov P, Kuzmichev P, Popov AN, Round E, Borshchevskiy V, Ishchenko A, Petrovskaya L, Chupin V, Dolgikh DA, Arseniev AA, Kirpichnikov M, Gordeliy V, Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12631-6. doi:, 10.1073/pnas.1221629110. Epub 2013 Jul 19. PMID:23872846

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk] Biological Unit Coordinates (4hyj.pdb1.gz) 80 Kb Biological Unit Coordinates (4hyj.pdb2.gz) 78 Kb LPC: Ligand-Protein Contacts for 4HYJ CSU: Contacts of Structural Units for 4HYJ Structure Factors (617 Kb) Retrieve 4HYJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4HYJ from S2C, [Save to disk] Re-refined 4hyj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4HYJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4HYJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4HYJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4hyj_B] [4hyj] [4hyj_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4HYJ: [Bac_rhodopsin ] by SMART

Other resources with information on 4HYJ

Community annotation for 4HYJ at PDBWiki (http://pdbwiki.org)

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