4HYY	Recombination	date	Nov 14, 2012
title	Filament Of Octameric Rings Of Dmc1 Recombinase From Homo Sa
authors	L.Du, Y.Luo
compound		source
Molecule: Meiotic Recombination Protein Dmc1lim15 Homolog Chain: A, B, C, D Fragment: Atpase Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dmc1, Dmc1h, Lim15 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21-Rosetta2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 4	R_factor 0.179 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.997 123.997 91.713 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of a filament of stacked octamers of human DMC1 recombinase., Du L, Luo Y, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):382-6. doi:, 10.1107/S1744309113005678. Epub 2013 Mar 28. PMID:23545642

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk] Biological Unit Coordinates (4hyy.pdb1.gz) 639 Kb Biological Unit Coordinates (4hyy.pdb2.gz) 643 Kb Biological Unit Coordinates (4hyy.pdb3.gz) 1277 Kb CSU: Contacts of Structural Units for 4HYY Structure Factors (616 Kb) Retrieve 4HYY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4HYY from S2C, [Save to disk] Re-refined 4hyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4HYY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4HYY

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4HYY, from MSDmotif at EBI Fold representative 4hyy from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4hyy_B] [4hyy_C] [4hyy_D] [4hyy] [4hyy_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4HYY: [AAA ] by SMART

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