4HYY Recombination date Nov 14, 2012
title Filament Of Octameric Rings Of Dmc1 Recombinase From Homo Sa
authors L.Du, Y.Luo
compound source
Molecule: Meiotic Recombination Protein Dmc1lim15 Homolog
Chain: A, B, C, D
Fragment: Atpase Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dmc1, Dmc1h, Lim15
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Rosetta2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 4
R_factor 0.179 R_Free 0.246
length a length b length c angle alpha angle beta angle gamma
123.997 123.997 91.713 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
A, D, C, B

Primary referenceStructure of a filament of stacked octamers of human DMC1 recombinase., Du L, Luo Y, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):382-6. doi:, 10.1107/S1744309113005678. Epub 2013 Mar 28. PMID:23545642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (4hyy.pdb1.gz) 639 Kb
  • Biological Unit Coordinates (4hyy.pdb2.gz) 643 Kb
  • Biological Unit Coordinates (4hyy.pdb3.gz) 1277 Kb
  • CSU: Contacts of Structural Units for 4HYY
  • Structure Factors (616 Kb)
  • Retrieve 4HYY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HYY from S2C, [Save to disk]
  • Re-refined 4hyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HYY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4HYY, from MSDmotif at EBI
  • Fold representative 4hyy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hyy_B] [4hyy_C] [4hyy_D] [4hyy] [4hyy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4HYY: [AAA ] by SMART
  • Other resources with information on 4HYY
  • Community annotation for 4HYY at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science