4I06 Crystal structure of human Arginase-2 complexed with inhibitor 14 date
authors Cousido-Siah, A., Mitschler, A., Ruiz, F.X., Whitehouse, D.L., Golebiowski, A., Ji, M., Zhang, M., Beckett, P., Sheeler, R., Andreoli, M., Conway, B., Mahboubi, K., Schroeter, H., Zandt, M.C.Van., Podjarny, A.
compound source
symmetry
R_factor
R_Free 0.1954
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand BEN, BME, MN, X8A enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDiscovery of (R)-2-Amino-6-borono-2-(2-(piperidin-1-yl)ethyl)hexanoic Acid and Congeners As Highly Potent Inhibitors of Human Arginases I and II for Treatment of Myocardial Reperfusion Injury., Van Zandt MC, Whitehouse DL, Golebiowski A, Ji MK, Zhang M, Beckett RP, Jagdmann GE, Ryder TR, Sheeler R, Andreoli M, Conway B, Mahboubi K, D'Angelo G, Mitschler A, Cousido-Siah A, Ruiz FX, Howard EI, Podjarny AD, Schroeter H, J Med Chem. 2013 Mar 28;56(6):2568-80. doi: 10.1021/jm400014c. Epub 2013 Mar 8. PMID:23472952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (4i06.pdb1.gz) 165 Kb
  • Biological Unit Coordinates (4i06.pdb2.gz) 59 Kb
  • Biological Unit Coordinates (4i06.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (4i06.pdb4.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 4I06
  • CSU: Contacts of Structural Units for 4I06
  • Structure Factors (751 Kb)
  • Retrieve 4I06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I06 from S2C, [Save to disk]
  • Re-refined 4i06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I06
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I06, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i06_B] [4i06_A] [4i06_C] [4i06]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4I06
  • Community annotation for 4I06 at PDBWiki (http://pdbwiki.org)

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