4I39 Structures of ICT and PR1 intermediates from time-resolved laue crystallography collected at 14ID-B, APS date
authors Jung, Y.O., Lee, J.H., Kim, J., Schmidt, M., Vukica, S., Moffat, K., Ihee, H.
compound source
symmetry
R_factor
R_Free 0.371
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand HC4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceVolume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography., Jung YO, Lee JH, Kim J, Schmidt M, Moffat K, Srajer V, Ihee H, Nat Chem. 2013 Mar;5(3):212-20. doi: 10.1038/nchem.1565. Epub 2013 Feb 3. PMID:23422563
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4i39.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 4I39
  • CSU: Contacts of Structural Units for 4I39
  • Structure Factors (91 Kb)
  • Retrieve 4I39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I39 from S2C, [Save to disk]
  • Re-refined 4i39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I39
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I39, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i39] [4i39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I39: [PAS ] by SMART
    • Other resources with information on 4I39
  • Community annotation for 4I39 at PDBWiki (http://pdbwiki.org)

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