4I3G Crystal Structure of DesR, a beta-glucosidase from Streptomyces venezuelae in complex with D-glucose. date 2012-11-26
authors Zmudka, M.W., Holden, H.M.
compound source
symmetry
R_factor
R_Free 0.19876
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand BGC, EDO, MPO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of DesR from Streptomyces venezuelae, a beta-glucosidase involved in macrolide activation., Zmudka MW, Thoden JB, Holden HM, Protein Sci. 2012 Dec 6. doi: 10.1002/pro.2204. PMID:23225731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (4i3g.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (4i3g.pdb2.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 4I3G
  • CSU: Contacts of Structural Units for 4I3G
  • Structure Factors (4756 Kb)
  • Retrieve 4I3G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I3G from S2C, [Save to disk]
  • Re-refined 4i3g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I3G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I3G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I3G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i3g] [4i3g_A] [4i3g_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4I3G: [Fn3_like] [PA14 ] by SMART
  • Other resources with information on 4I3G
  • Community annotation for 4I3G at PDBWiki (http://pdbwiki.org)

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