4I3R date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
G


Primary referenceOuter domain of HIV-1 gp120: Antigenic optimization, structural malleability, and crystal structure with antibody VRC-PG04., Joyce MG, Kanekiyo M, Xu L, Biertumpfel C, Boyington JC, Moquin S, Shi W, Wu X, Yang ZY, Yang Y, Zhang B, Zheng A, Zhou T, Zhu J, Mascola JR, Kwong PD, Nabel GJ, J Virol. 2012 Dec 12. PMID:23236069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (4i3r.pdb1.gz) 208 Kb
  • LPC: Ligand-Protein Contacts for 4I3R
  • CSU: Contacts of Structural Units for 4I3R
  • Structure Factors (567 Kb)
  • Retrieve 4I3R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I3R from S2C, [Save to disk]
  • Re-refined 4i3r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I3R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i3r] [4i3r_G] [4i3r_H] [4i3r_L]
  • SWISS-PROT database:
  • Domains found in 4I3R: [IG_like] [IGv ] by SMART

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