4I5B Structure of human MHC class II protein HLA-DR1 carrying an influenza hemagglutinin peptide partially filling the binding groove date 2012-11-28
authors Schulze, M.S.E.D.
compound source
symmetry
R_factor
R_Free 0.2368
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.12
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceDisruption of hydrogen bonds between major histocompatibility complex class II and the peptide N-terminus is not sufficient to form a human leukocyte antigen-DM receptive state of major histocompatibility complex class II., Schulze MS, Anders AK, Sethi DK, Call MJ, PLoS One. 2013 Jul 25;8(7):e69228. doi: 10.1371/journal.pone.0069228. eCollection, 2013. PMID:23976922
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (4i5b.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (4i5b.pdb2.gz) 67 Kb
  • CSU: Contacts of Structural Units for 4I5B
  • Structure Factors (781 Kb)
  • Retrieve 4I5B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I5B from S2C, [Save to disk]
  • Re-refined 4i5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I5B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I5B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I5B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i5b_F] [4i5b] [4i5b_D] [4i5b_A] [4i5b_C] [4i5b_E] [4i5b_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4I5B: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART
  • Other resources with information on 4I5B
  • Community annotation for 4I5B at PDBWiki (http://pdbwiki.org)

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