4I5O Crystal Structure of W-W-R ClpX Hexamer date 2012-11-28
authors Glynn, S.E., Nager, A.R., Stinson, B.S., Schmitz, K.R., Baker, T.A., Sauer, R.T.
compound source
symmetry
R_factor
R_Free 0.3233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.48
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceNucleotide Binding and Conformational Switching in the Hexameric Ring of a AAA+ Machine., Stinson BM, Nager AR, Glynn SE, Schmitz KR, Baker TA, Sauer RT, Cell. 2013 Apr 25;153(3):628-39. doi: 10.1016/j.cell.2013.03.029. PMID:23622246
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (610 Kb) [Save to disk]
  • Biological Unit Coordinates (4i5o.pdb1.gz) 602 Kb
  • LPC: Ligand-Protein Contacts for 4I5O
  • CSU: Contacts of Structural Units for 4I5O
  • Structure Factors (124 Kb)
  • Retrieve 4I5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I5O from S2C, [Save to disk]
  • Re-refined 4i5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4I5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4I5O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I5O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i5o_A] [4i5o_E] [4i5o_F] [4i5o_B] [4i5o] [4i5o_D] [4i5o_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4I5O: [AAA] [ClpB_D2-small ] by SMART
    • Other resources with information on 4I5O
  • Community annotation for 4I5O at PDBWiki (http://pdbwiki.org)

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