4I7R T4 Lysozyme L99A/M102H with 2-(pyrazolo-1-yl) ethanol bound date 2012-11-30
authors Merski, M., Shoichet, B.K.
compound source
symmetry
R_factor
R_Free 0.1903
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.52
ligand 1DU, ACT, BME, HED, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Impact of Introducing a Histidine into an Apolar Cavity Site on Docking and Ligand Recognition., Merski M, Shoichet BK, J Med Chem. 2013 Mar 20. PMID:23473072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (4i7r.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4i7r.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4I7R
  • CSU: Contacts of Structural Units for 4I7R
  • Structure Factors (393 Kb)
  • Retrieve 4I7R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I7R from S2C, [Save to disk]
  • Re-refined 4i7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I7R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I7R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4I7R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i7r_B] [4i7r] [4i7r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4I7R
  • Community annotation for 4I7R at PDBWiki (http://pdbwiki.org)

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